Installation
You can install pyfastx via the Python Package Index (PyPI) (recommended) or from source.
Make sure you have installed both pip and Python before starting.
Currently, pyfastx
supports Python 3.6, 3.7, 3.8, 3.9, 3.10, 3.11 and can work on Windows, Linux, MacOS.
Install from PyPI
pip install pyfastx
Update pyfastx using pip
pip install -U pyfastx
Install from source
pyfastx
depends on zlib and sqlite3. If you want to compile and install pyfastx from source code. First, you should install zlib and sqlite3.
On Centos
yum install zlib-devel
yum install sqlite-devel
On Ubuntu
apt install zlib1g-dev
apt install libsqlite3-dev
On Windows and MacOS, it will automatically download zlib and sqlite3 library to build.
Second, clone pyfastx using git
or download latest release:
git clone https://github.com/lmdu/pyfastx.git
Then, cd
to the pyfastx folder and run install command:
cd pyfastx
python setup.py install