pyfastx
latest
Contents:
Installation
FASTX
FASTA
Sequence
FASTQ
Read
FastaKeys
FastqKeys
Command line interface
Multiple processes
Drawbacks
Changelog
API Reference
Acknowledgements
pyfastx
Index
Edit on GitHub
Index
A
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B
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C
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D
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E
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F
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G
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I
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K
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L
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M
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N
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P
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Q
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R
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S
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T
A
antisense (pyfastx.Sequence attribute)
avglen (pyfastx.Fastq attribute)
B
build_index() (pyfastx.Fasta method)
(pyfastx.Fastq method)
built-in function
pyfastx.gzip_check()
pyfastx.reverse_complement()
pyfastx.version()
C
complement (pyfastx.Sequence attribute)
composition (pyfastx.Fasta attribute)
(pyfastx.Fastq attribute)
(pyfastx.Sequence attribute)
count() (pyfastx.Fasta method)
D
description (pyfastx.Read attribute)
(pyfastx.Sequence attribute)
E
encoding_type (pyfastx.Fastq attribute)
end (pyfastx.Sequence attribute)
F
fetch() (pyfastx.Fasta method)
file_name (pyfastx.Fasta attribute)
(pyfastx.Fastq attribute)
filter() (pyfastx.FastaKeys method)
flank() (pyfastx.Fasta method)
G
gc_content (pyfastx.Fasta attribute)
(pyfastx.Fastq attribute)
(pyfastx.Sequence attribute)
gc_skew (pyfastx.Fasta attribute)
(pyfastx.Sequence attribute)
I
id (pyfastx.Read attribute)
(pyfastx.Sequence attribute)
is_gzip (pyfastx.Fasta attribute)
(pyfastx.Fastq attribute)
K
keys() (pyfastx.Fasta method)
(pyfastx.Fastq method)
L
longest (pyfastx.Fasta attribute)
M
maxlen (pyfastx.Fastq attribute)
maxqual (pyfastx.Fastq attribute)
mean (pyfastx.Fasta attribute)
median (pyfastx.Fasta attribute)
minlen (pyfastx.Fastq attribute)
minqual (pyfastx.Fastq attribute)
N
name (pyfastx.Read attribute)
(pyfastx.Sequence attribute)
nl() (pyfastx.Fasta method)
P
phred (pyfastx.Fastq attribute)
pyfastx.Fasta (built-in class)
pyfastx.FastaKeys (built-in class)
pyfastx.Fastq (built-in class)
pyfastx.FastqKeys (built-in class)
pyfastx.Fastx (built-in class)
pyfastx.gzip_check()
built-in function
pyfastx.Read (built-in class)
pyfastx.reverse_complement()
built-in function
pyfastx.Sequence (built-in class)
pyfastx.version()
built-in function
Q
qual (pyfastx.Read attribute)
quali (pyfastx.Read attribute)
R
raw (pyfastx.Read attribute)
(pyfastx.Sequence attribute)
reset() (pyfastx.FastaKeys method)
reverse (pyfastx.Sequence attribute)
S
search() (pyfastx.Sequence method)
seq (pyfastx.Read attribute)
(pyfastx.Sequence attribute)
shortest (pyfastx.Fasta attribute)
size (pyfastx.Fasta attribute)
(pyfastx.Fastq attribute)
sort() (pyfastx.FastaKeys method)
start (pyfastx.Sequence attribute)
T
type (pyfastx.Fasta attribute)
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